species:   Bodot
pid:       PID1123
parent:    Bd-milR68
paralog:   
locus:     MU009151.1:2257898-2258140
matures:   ['UUAGUCCCUAUGGUGUAGAUAUC', 'UAUCACACGCGAAGUAGUACUC']
srr:       SRR8374847
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram MU009151.1:2257898-2258140

0 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

        ************************                                                                                                                                                                                *************************          
UUAAUGCUCGUAUCACACGCGAAGUAGUACUCCUUGGUUGGCAGGCGGGACAUCCCGCUGGUCUCAGCUUCUGGAAGAGCAUAAGGUAGCGGCAAGCACCAGGACCCUGAUCAGCCUCCUAUGCGACGGAACACAAAUUCUGUGUAUGGAUCCGCCUGAAUAGUUGCAGCAGCCCGAGGACCAAAUCCGGUAUACACUGUAGCUAUUGGAUUAGUCCCUAUGGUGUAGAUAUCAAAUCAUUAU
.(((((...(((((((((.((.((.(.((.(((..((((((((((((((....))))).(((((..((((......))))....(((.((.....))))).)))))))).))))))..((((((.((((((......)))))))))))).........(((((((((((..(((.((........)).))).....)))))))))))))).)).)..)).)))))).))))).....))))).
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGUCCCUAUGGUGUAGAUAUC---------- l=23 a=0 c
----------UAUCACACGCGAAGUAGUACUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 c*
------------------------------------------------------------------------------------------------------------------------------------------------UAUGGAUCCGCCUGAAUAGUUG----------------------------------------------------------------------------- l=22 a=1 ma
----------UAUCACACGCGAAGUAGUACUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------------------------------------------------------------------------------------------------UAUGGAUCCGCCUGAAUAGUUG----------------------------------------------------------------------------- l=22 a=1 (ma)

mb-00011
ax-1001111
ku-01
ss-110111101110
fn-111
